Execution

Bob's environment has a container runtime (e.g. podman or docker) and the cwltool CWL runner.

Setting-up the environment on the AppHub Coder application

Firstly, clone this repo:

git clone https://github.com/eoap/open-reproducible-app-package

Click on File then Open Folder... and browser to the cloned directory open-reproducible-app-package

Go back to the terminal and create the Python environment with:

python -m venv env_reproducible_app
source env_reproducible_app/bin/activate
pip install -r requirements.txt
python -m ipykernel install --user --name env_reproducible_app --display-name "env_reproducible_app"

Execution

The execution is operated with the Jupyter Notebook notebook.ipynb.